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NMR Characterizations of the Ice Binding Surface of an Antifreeze Protein

机译:防冻蛋白冰结合表面的NMR表征

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摘要

Antifreeze protein (AFP) has a unique function of reducing solution freezing temperature to protect organisms from ice damage. However, its functional mechanism is not well understood. An intriguing question concerning AFP function is how the high selectivity for ice ligand is achieved in the presence of free water of much higher concentration which likely imposes a large kinetic barrier for protein-ice recognition. In this study, we explore this question by investigating the property of the ice binding surface of an antifreeze protein using NMR spectroscopy. An investigation of the temperature gradient of amide proton chemical shift and its correlation with chemical shift deviation from random coil was performed for CfAFP-501, a hyperactive insect AFP. A good correlation between the two parameters was observed for one of the two Thr rows on the ice binding surface. A significant temperature-dependent protein-solvent interaction is found to be the most probable origin for this correlation, which is consistent with a scenario of hydrophobic hydration on the ice binding surface. In accordance with this finding, rotational correlation time analyses combined with relaxation dispersion measurements reveals a weak dimer formation through ice binding surface at room temperature and a population shift of dimer to monomer at low temperature, suggesting hydrophobic effect involved in dimer formation and hence hydrophobic hydration on the ice binding surface of the protein. Our finding of hydrophobic hydration on the ice binding surface provides a test for existing simulation studies. The occurrence of hydrophobic hydration on the ice binding surface is likely unnecessary for enhancing protein-ice binding affinity which is achieved by a tight H-bonding network. Subsequently, we speculate that the hydrophobic hydration occurring on the ice binding surface plays a role in facilitating protein-ice recognition by lowering the kinetic barrier as suggested by some simulation studies.
机译:防冻蛋白(AFP)具有降低溶液冷冻温度的独特功能,可保护生物免受冰冻破坏。但是,其功能机制尚不清楚。关于AFP功能的一个有趣的问题是,在浓度高得多的游离水存在下,如何实现对冰配体的高选择性,这可能对蛋白质冰的识别施加很大的动力学障碍。在这项研究中,我们通过使用NMR光谱研究防冻蛋白冰结合表面的性质来探索这个问题。对高活性昆虫AFP CfAFP-501进行了酰胺质子化学位移的温度梯度及其与随机线圈化学位移偏差的相关性研究。对于冰结合表面上的两个Thr行之一,观察到两个参数之间的良好相关性。显着的温度依赖性蛋白-溶剂相互作用被发现是这种相关性的最可能起源,这与冰结合表面上疏水水合的情况一致。根据这一发现,旋转相关时间分析与弛豫分散度测量相结合,揭示了室温下通过冰结合表面形成的二聚体微弱,而低温下二聚体向单体的迁移则表明了疏水作用,从而参与了二聚体的形成并因此产生了疏水水合在蛋白质的冰结合表面上。我们在冰结合表面上疏水水合的发现为现有的模拟研究提供了测试。在冰结合表面上疏水水合的发生对于增强蛋白-冰的结合亲和力可能是不必要的,这是通过紧密的H键网络实现的。随后,我们推测在冰结合表面上发生的疏水水合通过降低动力学障碍(如一些模拟研究所建议的那样)在促进蛋白质冰的识别中起作用。

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